PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000047.1_g00025.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 128aa    MW: 13787.7 Da    PI: 10.9369
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000047.1_g00025.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00012446123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             + C+ C + F+++  L rH+r+H
  Itr_sc000047.1_g00025.1 24 HICSMCRRWFNSRQALFRHMRLH 46
                             68*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.52E-62148No hitNo description
SMARTSM003558.9E-42446IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.0972446IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MSRNNGDGSS SLNFPPAGQP QQNHICSMCR RWFNSRQALF RHMRLHRSPM WRGTFPPPVF  60
NRGHVANVPP LLGIAAGGGQ VAAAQPPIAA PPVDNAPPAQ PGAAVALPDL NEPQYYRVPD  120
LNFPPPPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.16e-09C2H2 family protein